PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G162700.1
Common NameB456_003G162700, LOC105789156
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 201aa    MW: 22064.8 Da    PI: 5.172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G162700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-174089255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++GVr++k  ++Wv+e+r+p   +k++r++lg++ t+e+Aa+a++ a+++++g
  Gorai.003G162700.1 40 IFRGVRQRK-VNKWVCELREP---NKKTRIWLGTYPTPEMAARAHDVAALAFRG 89
                        59*******.7*********8...347************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.16E-293999No hitNo description
PfamPF008474.3E-133989IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-214099IPR016177DNA-binding domain
PROSITE profilePS5103221.2984097IPR001471AP2/ERF domain
SMARTSM003801.2E-2940103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-304099IPR001471AP2/ERF domain
PRINTSPR003672.9E-74152IPR001471AP2/ERF domain
PRINTSPR003672.9E-76379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAAETAETPS SSSEEVYSLA TSQPKKRAGR RIFKETRHPI FRGVRQRKVN KWVCELREPN  60
KKTRIWLGTY PTPEMAARAH DVAALAFRGK SACLNFADSA WKLPLPASMD AIDIRRAAVE  120
AAEAFRPKES EEPLGGGGTR QGSVEACSSG VEVNFVDEEA MFDMPNLLAS MAEGLLLSPP  180
RSTNRDDDDD SDIDVSLWSY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332540.0KR233254.1 Gossypium barbadense C-repeat binding factor 5-like protein (CBF5L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471868.11e-147PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ931e-67DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0D2P2A61e-147A0A0D2P2A6_G
STRINGPOPTR_0001s08720.17e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-59C-repeat-binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]